Training, Open Source computer languages
PerlPHPPythonMySQLApache / TomcatTclRubyJavaC and C++LinuxCSS 
Search for:
Home Accessibility Courses Diary The Mouth Forum Resources Site Map About Us Contact
 
20.9.2014 - We have just updated our course layouts and descriptions and added our 2015 schedule.

whats the error?

Posted by revtopo (revtopo), 18 June 2007
hi there,

In the code am workiing with i need to usebioperl inorder to reterive te sequence information form the file that i lready have in hand.  
this is the code that i used but it shows some exceptions in the line that I hve quoted below.

my $seqin = Bio::SeqIO->new('./topo_seqs.srs');

and the exception that am getting is:

EXCEPTION: Bio::Root::Exception -------------
MSG: Unknown format given or could not determine it []
STACK: Error::throw
STACK: Bio::Root::Root::throw /jic-atidb/perl/lib/site_perl/5.8.0/i686-linux/Bio/Root/Root.pm:359
STACK: Bio::SeqIO::new /jic-atidb/perl/lib/site_perl/5.8.0/i686-linux/Bio/SeqIO.pm:374
STACK: protein.pl:8

how can i get out of this?
thanks.

Posted by admin (Graham Ellis), 18 June 2007
It's a specific error from the module (which is not one I'm familiar with). At face value, it appears to be saying that the file you are attempting to read in is not in a format that it recognises.



This page is a thread posted to the opentalk forum at www.opentalk.org.uk and archived here for reference. To jump to the archive index please follow this link.

You can Add a comment or ranking to this page

© WELL HOUSE CONSULTANTS LTD., 2014: Well House Manor • 48 Spa Road • Melksham, Wiltshire • United Kingdom • SN12 7NY
PH: 01144 1225 708225 • FAX: 01144 1225 899360 • EMAIL: info@wellho.net • WEB: http://www.wellho.net • SKYPE: wellho