how to get clusters - Perl Programming

11220 how to get clusters - Perl Programming

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how to get clusters

Posted by revtopo (revtopo), 4 January 2008

Hi all,
I am working on a dataset that contains 4 columns chromosom_id, fstart, fstop, counts. These datasets are something like this:<br/>
<code>
Chromosom_id fstart fstop Count
1 105 1 14.5
1 105 1 14.5
1 105 1 14.5
1 813 797 4
1 813 797 22
1 813 797 4
1 813 797 22
1 800 816 23
1 802 818 24
1 804 820 32
1 804 820 44
1 813 797 4
1 813 797 22
</code>
I would like to get a cluster that contains the hits that are less than 200bp in length.So as for as in this case the sets the first three hits should be made as one cluster and the rest other should be made as another cluster. Could i get suggestions from you guys.And i have succeeded in just parsing the file.<br/>

Thanks

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