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help in perl Posted by sirisha (sirisha), 18 January 2008 Hi,I have a small doubt regarding my program. Hope you will help me in solving that. Example: $a="agaaaagavvgglggy" $b=<STDIN>; let the input seq is "ttttttttttagaaaagavtttggyttttttt"; here the input matches with $a only with the letters in bold : ttttttttttagaaaagavtttggyttttttt i want to know what we can do to give input showing both matches and mismatches in the input.(mismatch shold me shown as a hiphen) That means the output should be like this: The given sequence matches with the pattern at - - - - - - - - - - agaaaagav- - -ggy - - - - - - - Hope you will help me in solving out this. Thanks in advance, siri This page is a thread posted to the opentalk forum
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